Phylogenetics & Phylogeography Practical(Advanced Analytical Methods)
Practical session with Dr Sam Lycett, filmed at The Roslin Institute, March 2015.
(The recommended YouTube playback settings for the best viewing experience is 1080p HD )
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Content:
1. Data Set & Tasks for Practical
    - HPAI H5N1 data set
    - 92 sequences from 2003 – 2014
    - Domestic-galliformes, Domestic-anseriformes, Wild-anseriformes
    - Asia, Africa, Europe
2. Tasks (broadly)
    - Check Clock-like behaviour using Path-o-gen
    - Set up BEAST analysis using BEAUTi
    - Diagnose BEAST MCMC output in Tracer
    - Make tree figures using FigTree
    - Plot spatial-trees using SPREAD
3.General notes
    - Keep an electronic log book (e.g. Word document) of what you have done
    - including settings
    - results figures
    - Answers to questions and own observations (this is for your own benefit when you come back to it in 6months time.. )