Phylogenetics & Phylogeography Practical(Advanced Analytical Methods) Practical session with Dr Sam Lycett, filmed at The Roslin Institute, March 2015. (The recommended YouTube playback settings for the best viewing experience is 1080p HD ) ********************************* Content: 1. Data Set & Tasks for Practical - HPAI H5N1 data set - 92 sequences from 2003 – 2014 - Domestic-galliformes, Domestic-anseriformes, Wild-anseriformes - Asia, Africa, Europe 2. Tasks (broadly) - Check Clock-like behaviour using Path-o-gen - Set up BEAST analysis using BEAUTi - Diagnose BEAST MCMC output in Tracer - Make tree figures using FigTree - Plot spatial-trees using SPREAD 3.General notes - Keep an electronic log book (e.g. Word document) of what you have done - including settings - results figures - Answers to questions and own observations (this is for your own benefit when you come back to it in 6months time.. )
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