Phylogenetics & Phylogeography Practical(Advanced Analytical Methods) Practical session with Dr Sam Lycett, filmed at The Roslin Institute, March 2015. (The recommended YouTube playback settings for the best viewing experience is 1080p HD ) ********************************* Content: Part 2: Set up a BEAST analysis - Make XMLs with BEAUTI - plain - SRD06, relaxLn, constPop with - clock rate prior = normal(mean=4e-3,std. dev=4e-3), range 0-0.1 - CP1+2,3 priors uniform 0-100
With traits: - Host trait, and Region trait (separately), using asymmetric model - Latitude and Longitude, using 2 part continuous trait and brownian motion model - Start the “plain” XML in BEAST (to check it runs) - The completed runs are supplied – look at the *_screen_output.txt files; how long did they take ?
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