Phylogenetics & Phylogeography Practical(Advanced Analytical Methods) Practical session with Dr Sam Lycett, filmed at The Roslin Institute, March 2015. (The recommended YouTube playback settings for the best viewing experience is 1080p HD ) ********************************* Content: Making and Displaying Trees - Make trees using tree annotator - - burnin=1000 (10%) - - note for SPREAD need to set probability at 0 so all nodes are annotated - Display trees in fig tree - -set dates and get time scale right (last date is 2014.342 = 6 May 2015), need to “reverse” time scale (due to coalescent theory) - -show colours of host trait and region trait - output to pdf and png
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