Phylogenetics & Phylogeography Practical(Advanced Analytical Methods)
Practical session with Dr Sam Lycett, filmed at The Roslin Institute, March 2015.
(The recommended YouTube playback settings for the best viewing experience is 1080p HD )
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Content:
Making and Displaying Trees
- Make trees using tree annotator
- - burnin=1000 (10%)
- - note for SPREAD need to set probability at 0 so all nodes are annotated
- Display trees in fig tree
- -set dates and get time scale right (last date is 2014.342 = 6 May 2015), need to “reverse” time scale (due to coalescent theory)
- -show colours of host trait and region trait
- output to pdf and png